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基于MiSeq测序技术分析红鳍东方鲀养殖环境菌群多样性

赵晓伟,丁君**,窦妍,王梦鸽,常亚青   

  1. (大连海洋大学农业部北方海水增养殖重点实验室, 辽宁大连 116023)
  • 出版日期:2015-10-10 发布日期:2015-10-10

Bacterial diversity in the breeding environment of Takifugu rubripes revealed by MiSeq sequencing.

ZHAO Xiao-wei, DING Jun**, DOU Yan, WANG Meng-ge, CHANG Ya-qing   

  1. (Ministry of Agriculture Key Laboratory of Mariculture & Stock Enhancement in North China’s Sea, Dalian Ocean University, Dalian 116023, Liaoning, China)
  • Online:2015-10-10 Published:2015-10-10

摘要: 养殖环境中的微生物在物质循环及能量流动中发挥着重要的作用。对养殖环境中微生物多样性研究,不仅可以为养殖过程中病害防治提供基础,还可以发现新的微生物资源。本文利用MiSeq测序技术分析了大连某养殖公司红鳍东方鲀养殖环境中室内养殖环境水、室外入水口水和底泥中菌群结构特征,从室内养殖环境水、室外入水口水和室外入水口底泥样品中分别获得27164、41146和30474条有效序列。结果表明:红鳍东方鲀养殖环境中具有较高的菌群多样性,其中室外入水口底泥中菌群多样性较其相应养殖水环境中菌群多样性高;3个样品中的细菌可归为33个门类,除常见报道的绿弯菌门、拟杆菌门、浮霉菌门、蓝藻门、酸杆菌门、变形菌门、梭杆菌门、疣微菌门、厚壁菌门和放线菌门外,还有23个鲜见报道的门类的菌群被检测到;各样品中菌群组成虽有差异,但变形菌门和拟杆菌门为优势菌,约占68.33%~93.37%。本文揭示了大连某养殖公司红鳍东方鲀池塘养殖环境中的菌群多样性和丰度,比较了其菌群结构及差异,为红鳍东方鲀健康养殖提供参考。

关键词: 氧化, 黑腹果蝇, H2O2, 卷翅, white基因

Abstract: Microorganisms play an important role in matter cycle and energy flow in aquaculture environment. Studies on microorganism diversity in aquaculture environment not only lay the foundation of disease control but also explore new microorganism resources. In this study, Illumina Miseq was used to analyze the structure characters of microbiome living in Dalian Takifugu rubripesculturing water indoors, water inlet point outdoors and bottom sludge respectively. For the three samples, 27164, 41146 and 30474 effective sequences were selected and utilized to perform bacterial diversity analysis. The results disclosed great bacterial diversities in the Takifugu rubripes aquaculture environment. Furthermore, the richness and diversity indices in the sediment samples were higher than that in the water samples. In total, 33 phyla were identified. In addition to Chloroflexi, Bacteroidetes, Planctomycetes, Cyanophyta, Acidobacteria, Proteobacteria, Fusobacterium, Verrucomicrobia, Firmicutes and Actinobacteria that have often been reported, other 23 phyla rarely reported were detected too. Although there were differences in microbial composition between these three samples, Proteobacteria and Bacteroidetes (68.33%-93.37%) were the dominant groups in all samples. This study reveals the bacterial diversity and abundance in Dalian Takifugu rubripes culturing environment, compares the bacterial community structures and provides guidance for healthy aquaculture of Takifugu rubripes.

Key words: H2O2, Drosophila melanogaster, curly wing, white gene, oxidation.