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生态学杂志 ›› 2024, Vol. 43 ›› Issue (11): 3412-3422.doi: 10.13292/j.1000-4890.202411.025

• 研究报告 • 上一篇    下一篇

采用不同物种注释方法研究沙漠蓝藻空间分布及其驱动因子

李红鑫1,2,吕杰3,马媛1,2*,李二阳1,2   

  1. (1新疆大学生态与环境学院, 绿洲生态教育部重点实验室, 乌鲁木齐 830017; 2新疆精河温带荒漠生态系统教育部野外科学观测研究站, 新疆精河 833300; 3新疆大学生命科学与技术学院, 新疆生物资源基因工程重点实验室, 乌鲁木齐 830017)

  • 出版日期:2024-11-10 发布日期:2024-11-12

Assessing the spatial distribution and driving factors of desert cyanobacteria by different species annotation methods.

LI Hongxin1,2, Lü Jie3, MA Yuan1,2*, LI Eryang1,2   

  1. (1Key Laboratory of Oasis Ecology of Ministry of Education, College of Ecology and Environment, Urumqi 830017, China; 2Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Jinghe 833300, Xinjiang, China; 3Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830017, China).

  • Online:2024-11-10 Published:2024-11-12

摘要: 蓝藻作为荒漠生物结皮重要组成部分,若采用细菌通用引物进行16S rRNA扩增子研究效果不佳。蓝藻16S rRNA特异性引物已有克隆文库研究结果验证其有效性,但采用该特异性引物进行扩增子研究时缺乏合适的物种注释方法。本研究开展两种引物的扩增比对,并进行不同数据库蓝藻物种注释比较,建立沙漠蓝藻16S rRNA扩增子物种注释及分析流程,结合土壤理化性质对古尔班通古特沙漠3个区域藻类结皮土壤中蓝藻多样性、群落结构及环境驱动因子进行研究。结果表明:蓝藻特异性引物可较为特异地扩增沙漠蓝藻,蓝藻门序列占90.54%。其扩增所获OTUs(Operational Taxonomic Units)代表性序列与Kraken2标准库比对注释效果最好,可得蓝藻4目13科19属,优势属为颤藻属和微鞘藻属。不同区域结皮土壤中蓝藻群落α和β多样性不存在显著性差异,群落结构均匀,未产生分化。沙漠不同区域藻类结皮的土壤总氮、铵态氮、硝态氮等存在显著性差异(P<0.05)。Mantel检验和相关分析显示,结皮土壤铵态氮含量与蓝藻群落结构呈极显著相关(P<0.01),颤藻属与微生物氮呈显著正相关,微鞘藻属与硝态氮呈显著负相关。研究结果可为沙漠蓝藻16S rRNA扩增子研究建立一个较好的注释及分析流程,并可为蓝藻群落结构、物种多样性与环境驱动因子的相关研究提供科学支持。


关键词: 古尔班通古特沙漠, 藻类结皮, 蓝藻, 高通量测序, 生物多样性

Abstract: Cyanobacteria, an important component of biological soil crusts in desert, exhibit low representation if studied using 16S rRNA amplicons with bacterial universal primers. The effectiveness of cyanobacteria 16S rRNA-specific primers has been verified by clone library studies, but appropriate species annotation methods for the study of amplicon by using this special primer are lacking. We conducted amplification comparison between the two primers, and compared cyanobacteria species annotation in different databases to establish species annotation and analysis process of desert cyanobacteria 16S rRNA amplicons. Combined with soil physicochemical properties, the diversity, community structure and environmental driving factors of cyanobacteria in algal crust soils in three regions of Gurbantunggut Desert were studied. The results showed that the cyanobacteria-specific primers could amplify desert cyanobacteria specifically, and that the cyanobacteria sequence accounted for 90.54%. The representative sequences of Operational Taxonomic Units (OTUs) obtained by the amplification had the optimal annotation effect when compared with Kraken2 standard library. The results showed that 4 orders, 13 families and 19 genera of cyanobacteria were obtained, and the dominant genera were Oscillatoria and Microcoleus. There was no significant difference in the α and β diversity, as well as abundance, of cyanobacterial communities in soil crust across different regions. The community structure was uniform, without obvious differentiation. Soil physicochemical factors, such as total nitrogen, ammonium nitrogen and nitrate nitrogen of algal crust, were significantly different in different regions of the desert (P<0.05). Results of Mantel test and correlation analysis showed that ammonium nitrogen content in crust soil was significantly correlated with the community structure of cyanobacteria (P<0.01). There was a significant positive correlation between Oscillatoria and microbial nitrogen, and a significant negative correlation between Microcoleus and nitrate nitrogen. These results could provide a better annotation and analysis process for the study of 16S rRNA amplicon of desert cyanobacteria, and provide a scientific basis for examining the community structure, species diversity and environmental driving factors of cyanobacteria.


Key words: Gurbantunggut Desert, algal crusts, cyanobacteria, high-throughput sequencing, biodiversity