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长江上游异鳔鳅鮀线粒体控制区遗传多样性

董微微1,2,汪登强2,田辉伍2,俞立雄1,2,申绍祎1,2,段辛斌2,陈大庆2*   

  1. 1西南大学生命科学学院, 重庆北碚 400715;2农业部长江中上游渔业资源环境科学观测实验站, 中国水产科学研究院长江水产研究所, 武汉 430223)
  • 出版日期:2018-05-10 发布日期:2018-05-10

Genetic diversity of Xenophysogobio boulengeriin the upper Yangtze River based on mtDNA control region sequences.

DONG Wei-wei1,2, WANG Deng-qiang2, TIAN Hui-wu2, YU Li-xiong1,2, SHEN Shao-yi1,2, DUAN Xin-bin2, CHEN Da-qing2*   

  1. (1School of Life Sciences, Southwest University, Chongqing 400715, China;2Key Field Scientific Observing and Experimental Station of Fishery Resources and Environment of the Middle and Upper Reaches of the Yangtze River of the Ministry of Agriculture, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Science, Wuhan 430223, China).
  • Online:2018-05-10 Published:2018-05-10

摘要: 异鳔鳅鮀(Xenophysogobio boulengeri)是长江上游特有鱼类,目前主要分布在长江上游干流及岷江江段,近年来其资源量呈显著下降趋势。本研究采用线粒体DNA(mtDNA)控制区序列,分析江津、南溪、犍为和水富4个群体共178尾异鰾鳅鮀的遗传多样性。结果表明:异鳔鳅鮀线粒体控制区序列共检测出38个变异位点,定义41个单倍型;平均单倍型多样性(Hd)和平均核苷酸多样性(Pi)分别为0.817和0.002;分子方差分析(AMOVA)显示总群体间无显著遗传分化,绝大部分变异来自群体内部;但基因流(Nm)分析显示部分群体间基因交流受到阻碍,两两群体间的FST值支持部分群体间出现初步分化;错配分布及中性检验表明,异鳔鳅鮀在历史上曾发生过群体扩张事件,发生群体扩张的时间是0.0173 Ma;单倍型网络结构及NJ系统发育分析显示异鳔鳅鮀遗传结构比较单一。基于上述结论,应将异鳔鳅鮀作为一个整体进行就地保护。

关键词: 长白山, 气候变化, 土壤微生物, 植物资源, CiteSpace, 火山地质学, 森林生态学

Abstract: Xenophysogobio boulengeri is an endemic fish in the upper reaches of the Yangtze River, which mainly distribute in the main river from Chongqing to Shuifu and Minjiang River, a tributary of the Yangtze River. The natural resource of this species declined in recent years. In this study, mtDNA control region sequences were used to analyze the population genetic structure of X. boulengeri. A total of 38 polymorphic sites were detected from data set of 839 bp, which defined 41 haplotypes from 178 individuals. The average haplotype diversity (Hd) and nucleotide diversity (Pi) were 0.817 and 0.002, respectively. Analysis of molecular variance (AMOVA) indicated that most of the genetic variation (96.05%) existed within populations. However, pairwise AMOVA showed that FST values among Jiangjin population and other populations, and among Shuifu population and other populations were greater than 7%, indicating moderate genetic divergence between these populations. The mismatch distribution and neutral test revealed that X. boulengeri population had experienced an expansion event in about 0.0173 Ma. The haplotype network structure and NJ phylogenetic tree demonstrated single genetic population. Our results suggest that X. boulengeri should be wholly conserved in situ.

Key words: volcanic geology, climate change, soil microorganism, plant resource, forest ecology, Changbai Mountain, CiteSpace.