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生态学杂志 ›› 2011, Vol. 30 ›› Issue (01): 1-6.

• 研究报告 •    下一篇

背角无齿蚌基因组(GT)n微卫星DNA特征

汪桂玲1,苏 翔1,李家乐1,2**,白志毅1   

  1. 1海海洋大学省部共建水产种质资源发掘与利用教育部重点实验室,上海 201306;2上海市高校水产养殖学E-研究院,上海 201306
  • 出版日期:2011-01-08 发布日期:2011-01-08

Characterization of (GT)n microsatellite in Anodonta woodiana genome.

WANG Gui-ling1, SU Xiang1, LI Jia-le1,2**, BAI Zhi-yi1   

  1. 1Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, Shanghai 201306, China|2Aquaculture Division, EInstitute of Shanghai Universities, Shanghai 201306, China
  • Online:2011-01-08 Published:2011-01-08

摘要: 利用磁珠富集法筛选背角无齿蚌(Anodonta woodiana)的微卫星分子标记,采用Sau3A1酶对完整DNA进行酶切,以生物素标记的(GT)15寡核苷酸探针从酶切片段中筛选微卫星序列。洗脱的杂交片段克隆到PGEM-T载体上构建富集微卫星基因组文库后,通过菌液PCR筛选检测出阳性克隆进行测序。结果表明:在筛选的180个阳性菌落中,得到37条非冗余序列包含有重复次数不少于5次的微卫星位点,富集效率为20.6%,核心重复序列主要为两碱基重复,占所有微卫星序列的86.4%,其中完美型占32.0%,非完美型占10.0%,复合型占8.0%,非完美与复合型共存的占50.0%;其中完美类型微卫星最大的重复次数为65次;在37条非冗余序列中,共有30条微卫星重复序列两端有侧翼序列能够进行引物设计,经过筛选,11对引物扩增清晰的多态性条带,可用于无齿蚌遗传分析。

关键词: 原甲藻, 赤潮, 形态结构, 分类

Abstract: The method of magnetic-bead hybridization enrichment was used to isolate the microsatellite loci of Anodonta woodiana. Genomic DNA was digested with restriction enzyme Sau3A1. The fragments were hybridized with biotin-labeled (GT)15 probe and captured by streptavidin-coated magnetic beads. The target fragments were inserted to PGEM-T vectors, and positive clones were obtained through PCR screening the library. By isolating the (GT) microsatellite in A. woodiana genome, 180 positive clones were sequenced, 37 sequences contained microsatellite having at least 5 times repeats numbers (20.6% of white colonies screened). From the microsatellites sequence, the two bases repeat arrays were most abundant, accounting for 86.4%, among which, 32.0% were perfect repeats, 10.0% imperfect repeats, 8.0% compound repeats, and 50.0% the combination of imperfect repeats and compound repeats. The largest repeat number of perfect type microsatellite was 65. This allowed us to design 30 pairs of primers from 37 microsatellite sequences. As a result, 11 pairs were screened and used successfully to amplify polymorphic fragments.

Key words: Prorocentrum, Harmful algal bloom, Morphology, Taxonomy