欢迎访问《生态学杂志》官方网站,今天是 分享到:

生态学杂志 ›› 2010, Vol. 29 ›› Issue (11): 2249-2257.

• 综述与专论 • 上一篇    下一篇

原核生物多样性研究的新工具

魏 博**,吴 欣   

  1. 厦门大学生命科学学院,福建厦门 361005
  • 出版日期:2010-11-08 发布日期:2010-11-08

New tools for prokaryote diversity study.

WEI Bo, WU Xin   

  1. School of Life Sciences, Xiamen University, Xiamen 361005, Fujian, China
  • Online:2010-11-08 Published:2010-11-08

摘要: 原核生物在自然界中分布广泛、数量巨大,参与多种全球性的物质循环和能量传递。然而,长期以来对其多样性的测度受到研究技术的限制。随着高通量测序、生物芯片等新技术的不断更新,原核生物多样性研究途径也在不断变化。目前,用于环境中原核生物多样性研究的高通量测序技术主要有Genome Sequencer FLX (GS FLX)测序系统和Illumina Genome Analyzer测序系统;而高通量芯片则以GeoChip为代表。但这些新兴技术手段各自的特点不同,得到的大量序列信息如何用于原核生物多样性测度以及哪些多样性测度手段适用,是研究人员需要面对的问题。因此,本文总结和比较了目前最新的研究手段和程序工具,并归纳了适应目前技术条件的原核生物多样性的主要研究途径。

关键词: 乌桕, 内生真菌, 菌丝生长, 脂肪酸组分, 环境因子

Abstract: Prokaryote, which is widespread in nature, makes a big biomass and participates in a variety of global material cycles and energy transfer. However, the measurement of prokaryote diversity has been limited by technique for a long time. With the development of new techniques such as high-throughput sequencing technique and biochip,  the research approaches for prokaryote diversity study have being changed. At present, Genome Sequencer FLX (GS FLX) and Illumina Genome Analyzer are the major approaches for environmental prokaryote diversity study, and GeoChip is the representative of the biochips. Nevertheless, each new emerging technique has its own characters. Some problems as how to use a mass of sequences to measure the prokaryote diversity and which approaches be more appropriate are the issues confronted by the related researches. This paper reviewed and compared the newest research means and computer program tools for prokaryote diversity study, and summarized the main research approaches adapting to the present technical conditions for this study.

Key words: Sapium sebiferum, Endophytic fungus, Mycelium growth, Fatty acid composition, Environmental factors