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刺参肠道及养殖环境菌群结构与功能

丁斯予,王荦,徐瀚晨,鲍学宇,王姮,常亚青,丁君*   

  1. (大连海洋大学农业部北方海水增养殖重点实验室, 辽宁大连 116023)
  • 出版日期:2019-01-10 发布日期:2019-01-10

Bacterial community structure and function in the intestinal tracts and culture environment of sea cucumber (Apostichopus japonicus).

DING Si-yu, WANG Luo, XU Han-chen, BAO Xue-yu, WANG Heng, CHANG Ya-qing, DING Jun*   

  1. (Key Laboratory of Mariculture & Stock Enhancement in North China’s Sea, Ministry of Agriculture, Dalian Ocean University, Dalian 116023, Liaoning, China).
  • Online:2019-01-10 Published:2019-01-10

摘要: 基于MiSeq高通量测序技术,分析了黄、渤海秋季池塘养殖刺参(Apostichopus japonicus)肠道及养殖环境菌落结构、α-多样性指数和菌群功能。结果表明:黄海和渤海养殖池塘底泥菌群Chao1指数、ACE的指数均较高,表明养殖池塘底泥菌群较为丰富;黄海和渤海养殖刺参肠道及养殖环境中优势菌门均为变形菌门(比例>43.25%);两个海域中刺参肠道中优势菌属相同,均为Halioglobus(比例>12.67%);养殖环境中的优势菌属则存在差异,黄海养殖水体的优势菌属为Roseibacillus(13.59%);渤海养殖水体优势菌属为海命菌属(Marivita)(21.33%);黄海养殖底泥样品DN1和DN2中优势菌属为Desulfopila(>9.26%),DN3中优势菌属为Halioglobus(3.67%);渤海养殖底泥中优势菌属为硫深海菌属(Thioprofundum)(3.79%);在渤海海域中还发现了特有菌属海命菌属(Marivita)、Ascidiaceihabitans、别弧菌属(Aliivibrio),且所占比例较大;黄海和渤海各样品中菌群经COG及KEGG数据库分析,共注释到24组COG功能分类,主要集中在氨基酸转运与代谢;41条KEGG信号通路,主要集中在氨基酸转运与代谢、碳水化合物代谢、膜转运。研究结果为合理进行刺参养殖、疾病防控提供了理论依据。

关键词: 天坑, 植物群落, 倒石堆, 物种多样性

Abstract: Based on the MiSeq high-throughput sequencing technology, we investigated the structure, α-diversity and function of bacterial community in the intestinal tracts and culture environment of the sea cucumbers (Apostichopus japonicus)  in autumn. The sea cucumbers were cultured in the ponds of the Yellow Sea and Bohai Sea. The results showed that the Chao1 and ACE indices of bacterial community in the bottom sediments of the Yellow Sea and the Bohai Sea were rela-tively high, indicating that the bacterial community in the bottom sediments of the culture ponds was abundant. The dominant bacterial phylum was Proteobacteria (with a proportion of >43.25%) in the intestine of sea cucumbers, pond sediments, and seawater of the Yellow Sea and Bohai Sea. Halioglobus (with a proportion of >12.67%) was the dominant bacterial genus in the intestine of the sea cucumbers in both sea areas. There were differences in the dominant genera in the culture environment. The dominant genus was Roseibacillus (13.59%) in the aquaculture water of the Yellow Sea and Marivita (21.33%) in that of the Bohai Sea. In the aquaculture sediments, the dominant genus was Desulfopila (>9.26%) in Yellow Sea and Thioprofundum (3.79%) in Bohai Sea. In addition, special species belonging to genera Marivita, Ascidiaceihabitans and Aliivibrio were found in the Bohai Sea and accounted for a large proportion. COG and KEGG annotation analysis revealed 24 COG functional groups (primarily serving functions such as amino acid transport and metabolism), and 41 KEGG pathways (mainly representing amino acid transport and metabolism, carbohydrate metabolism, and membrane transport). Our results provide scientific basis for healthy aquaculture of sea cucumber and disease prevention.

Key words: tiankeng, plant community, species diversity, talus