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藻类植物P450nor的生物信息学分析

王群1,2,肖璇3,邵一伦4,孙浩1,徐慧1*   

  1. 1中国科学院沈阳应用生态研究所, 中国科学院污染生态与环境工程重点实验室, 沈阳 110016;2中国科学院大学, 北京 100049;3沈阳药科大学, 沈阳 110016;4沈阳工学院, 辽宁抚顺 113122)
  • 出版日期:2018-08-10 发布日期:2018-08-10

The bioinformatics analysis of P450nor from algae.

WANG Qun1,2, XIAO Xuan3, SHAO Yi-lun4, SUN Hao1, XU Hui1*   

  1. (1Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China; 2University of Chinese Academy of Sciences, Beijing 100049, China; 3Shenyang Pharmaceutical University, Shenyang 110016, China; 4Shenyang Institute of Technology, Fushun 113122, Liaoning, China).
  • Online:2018-08-10 Published:2018-08-10

摘要: 氧化亚氮(N2O)是一种重要温室气体,细菌、真菌、藻类和高等植物均可释放N2O。细菌通过硝化与反硝化作用产生N2O,真菌通过关键酶P450nor生成N2O,但关于藻类和高等植物的N2O产生机制迄今却鲜有报道。本研究以进化地位处于真菌和高等植物中间的藻类为对象,从GenBank中筛选出来自3种藻类(莱茵衣藻、胸状盘藻和小球藻)的3条P450nor蛋白相似序列并进行预测和分析,其功能预测结果显示,三者均为定位于线粒体中的可溶性非分泌型亲水性蛋白,具有Pfam P450保守结构域和3个保守motif,由此推测藻类P450nor具有较高的保守性;其进化分析结果表明,藻类与真菌P450nor具有较高同源关系。因此,推测藻类P450nor具有与真菌相似的生物学功能。由于藻类特殊的进化地位,这将为探究藻类与高等植物的N2O产生机制及全球N2O源汇不平衡提供科学依据和线索。

关键词: 蚂蚁筑巢, 微生物生物量碳, 西双版纳, 热带森林, 微生物熵

Abstract: Nitrous oxide (N2O) is an important greenhouse gas, which could be produced by bacteria, fungi, algae and higher plants. Bacteria produce N2O through nitrification and denitrification. P450nor is the key enzyme involved in the production of N2O in fungi. However, the mechanism of N2O production in algae and higher plants has rarely been reported. In this study, algae, whose evolution status is between fungi and higher plants, was taken as a research object. From the uploaded data in GenBank, we obtained three different P450nor protein sequences from three algae species (Chlamydomonas reinhardtii, Gonium pectorale and Chlorella variabilis), which were systematically close to P450nor protein from fungi. Then, their functions and evolutionary relationships were examined. Those proteins are considered as soluble, non-secretory and hydrophilic ones in mitochondria. All of them included Pfam P450 conserved domain and three conserved motifs, suggesting that algae P450nor is highly conservative. Evolutionary analysis showed that the P450nor of algae and fungi has a high homology, implying that P450nor of algae and fungi have similar biological functions. Due to the special phylogenetic status of algae, our results would provide  molecular evidence for N2O biosynthesis of algae and a clue to the imbalance of global N2O budget.

Key words: microbial biomass carbon, Xishuangbanna., tropical forest, ant nesting, quotient of microbial biomass carbon