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• 方法与技术 • 上一篇    

基于高通量测序的3种竹子小枝真菌群落

耿显胜*,舒金平,彭瀚,张威   

  1. (中国林业科学研究院亚热带林业研究所, 杭州 311400)
  • 出版日期:2018-11-10 发布日期:2018-11-10

Fungal communities in twigs of three bamboo species based on high-throughput sequencing technology.

GENG Xian-sheng*, SHU Jin-ping, PENG Han, ZHANG Wei   

  1. (Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China).
  • Online:2018-11-10 Published:2018-11-10

摘要: 为了解感染丛枝病时竹子真菌群落的特征,以丛枝病侵染的斑竹(Phyllostachys bambusoides f.lacrimadeae)、毛竹(Ph. edulis)和早竹(Ph. praecox)小枝为研究材料,运用高通量测序技术、DNA条码技术和生物信息学技术,分析了感染丛枝病的斑竹、毛竹、早竹真菌群落的物种组成和多样性,探讨了竹子丛枝病病原菌与其他竹子真菌之间的相关性。结果表明:(1)3种竹子小枝共鉴定到706个最终的OTUs,所有样品中均存在的有48个;3种感病竹子真菌群落中相对丰度较高的菌群包括:针孢麦角菌属(Aciculosporium)、竹黄属(Shiraia)、漆斑菌属(Myrothecium)、棘壳孢属(Pyrenochaeta)、刺盘孢/炭疽菌属(Colletotrichum)、镰刀菌属(Fusarium)、弯梗孢属(Camptophora)和假酵母状菌属(Pseudozyma)。(2)3种感病竹子真菌群落间的Chao1指数和Shannon指数差异不显著(P>0.05)。(3)3种感病竹子的病原菌为竹针孢座囊菌(Aciculosporium take),该菌与13种竹子真菌之间存在负相关,其中9种的相关性达到显著水平(P<0.05);该菌与2种竹子真菌之间存在较弱的正相关。(4)鉴定的竹子真菌中存在绿色木霉(Trichoderma virens)、枝孢霉属真菌(Cladosporium sp.)、竹黄属真菌(Shiraia sp.)、弯孢霉属真菌(Curvularia sp.)、青霉属真菌(Penicillium sp.)和枝顶孢属真菌(Acremonium sp.),这些真菌是竹子病害潜在的生防菌。

关键词: 东北地区, 生态资本效率, Tobit回归, 超效率DEA模型

Abstract: To understand the characteristics of fungal communities of bamboo infected with witches’ broom disease and explore the correlation between witches’ broom pathogen and other bambusicolous fungi, species composition and diversity in fungal communities associated with witches’ broom diseased twigs of three bamboo species (Phyllostachys bambusoides f.lacrimadeae, Ph. edulis and Ph. praecox) were analyzed using highthroughput sequencing technology, DNA barcode technology, and bioinformatics technology. The results showed that: (1) A total of 706 OTUs were obtained, with 48 OTUs being shared by all samples. Aciculosporium, Shiraia, Myrothecium, Pyrenochaeta, Colletotrichum, Fusarium, CamptophoraandPseudozyma were the dominant genera of bambusicolous fungal communities. (2) Chao1 index and Shannon index were not significantly different among fungal communities (P>0.05). (3) The causal agent of witches’ broom disease of the three bamboo species was Aciculosporium take, which was negatively correlated with other 13 species of bambusicolous fungi, and nine of them were significantly correlated (P<0.05). This pathogen showed a weak positive correlation with other two species of bambusicolous fungi. (4) Trichoderma virens, Cladosporiumsp.,Shiraiasp.,Curvulariasp., Penicilliumsp. and Acremoniumsp. were important components of the fungal communities, which were the potential biocontrol agents of bamboo diseases.

Key words: ecological capital efficiency, super-efficiency DEA model, Tobit regression, Northeast China